Deep Learning for Image Analysis

2 Jun 2025, 09:00 → 6 Jun 2025, 17:00 Europe/Berlin

European Neuroscience Institute Göttingen

Constantin Pape (UMIN), Antonio Politi (Facility for Light Microscopy, MPI-NAT, Göttingen)

entrance_eni.jpg

Map to ENI

Monday 2 June

Introduction to DL and classification: Lecture and getting started

1 Lecture: Intro to DL for microscopy, classification and PyTorch

2 Getting started

• Participant introductions
• Setting up BAND, introducing first exercise on classification

12:00 Lunch

Introduction to DL and classification

3 First exercise: Cell classification

4 Recap first exercise

Tuesday 3 June

Segmentation & Pre-trained Models

5 Lecture: Semantic & Instance Segmentation (U-Net, StarDist, cellpose), pretrained models, denoising

10:30 Small break

6 Intro to exercises for Nucleus and Cell segmentation

12:00 Lunch

Segmentation & Pre-trained Models

Wednesday 4 June

Transfer Learning & Cell Segmentation

7 Lecture: T Transfer Learning & Instance Segmentation: CellPose. Data Annotation: Segment Anything. Other tools for DL in microscopy.

8 Work on third exercise

12:00 Lunch break

Transfer Learning & Cell Segmentation

9 Third and fourth exercise