Deep Learning for Image Analysis

Name: Deep Learning for Image Analysis
Start: 2025-06-02T09:00:00+02:00
End: 2025-06-06T17:00:00+02:00
Location: European Neuroscience Institute Göttingen

2 Jun 2025, 09:00 → 6 Jun 2025, 17:00 Europe/Berlin

European Neuroscience Institute Göttingen

ENI-G, Grisebachstr. 5, 37077 Göttingen

Constantin Pape (UMIN), Antonio Politi (Facility for Light Microscopy, MPI-NAT, Göttingen)

Contact

constantin.pape@informatik.uni-goettingen.de

antonio.politi@mpinat.mpg.de

Registration

Registration for the course Deep Learning for Image Analysis

Monday 2 June
- 09:00 → 12:00
  Introduction to DL and classification: Lecture and getting started
  - 09:00
    
    Lecture: Intro to DL for microscopy, classification and PyTorch 1h 30m
  - 10:30
    Getting started 1h 30m
    
    Participant introductions
    
    Setting up BAND, introducing first exercise on classification
- 12:00 → 12:45
  
  Lunch 45m
- 12:45 → 17:00
  Introduction to DL and classification
  - 12:45
    
    First exercise: Cell classification 3h 30m
  - 16:15
    
    Recap first exercise 45m
Tuesday 3 June
- 09:00 → 12:00
  Segmentation & Pre-trained Models
  - 09:00
    
    Lecture: Semantic & Instance Segmentation (U-Net, StarDist, cellpose), pretrained models, denoising 1h 30m
  - 10:30
    
    Small break 15m
  - 10:45
    
    Intro to exercises for Nucleus and Cell segmentation 1h 15m
- 12:00 → 12:45
  
  Lunch 45m
- 12:45 → 17:00
  
  Segmentation & Pre-trained Models
Wednesday 4 June
- 09:00 → 12:00
  Transfer Learning & Cell Segmentation
  - 09:00
    
    Lecture: T Transfer Learning & Instance Segmentation: CellPose. Data Annotation: Segment Anything. Other tools for DL in microscopy. 1h 30m
  - 10:30
    
    Work on third exercise 1h 30m
- 12:00 → 12:45
  
  Lunch break 45m
- 12:45 → 17:00
  Transfer Learning & Cell Segmentation
  - 12:45
    
    Third and fourth exercise 2h 30m

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Deep Learning for Image Analysis

European Neuroscience Institute Göttingen