Name: Deep Learning for Image Analysis
Start: 2026-07-06T09:00:00+02:00
End: 2026-07-10T18:00:00+02:00
Location: European Neuroscience Institute Göttingen

Deep Learning for Image Analysis

from Monday, 6 July 2026 (09:00) to Friday, 10 July 2026 (18:00)

Monday, 6 July 2026
09:00 Classification
09:00 - 12:30
Contributions

09:00 Lecture: Intro to DL for microscopy, classification and PyTorch

10:30 Getting started
12:30 Lunch
Lunch
12:30 - 13:30
13:30 Classification
13:30 - 17:00
Contributions

13:30 First exercise: Cell classification

16:30 Recap first exercise
Tuesday, 7 July 2026
09:00 Segmentation
09:00 - 12:30
Contributions

09:00 Lecture: Segmentation, pre-trained models, transfer learning

10:30 Intro to exercises for Nucleus and Cell segmentation
12:30 Lunch
Lunch
12:30 - 13:30
13:30 Segmentation
13:30 - 17:00
Contributions

13:30 Second exercise: Cell segmentation

16:00 Recap exercise 2. Image restoration and lecture recap.
Wednesday, 8 July 2026
09:00 Other deep learning tools
09:00 - 12:30
Contributions

09:00 Lecture: Overview of deep learning tools (micro-sam, cellpose, stardist, nn UNet, trackstra, ...)

10:30 Intro to third exercise
12:30 Lunch
Lunch
12:30 - 13:30
13:30 Other deep learning tools
13:30 - 17:45
Contributions

13:30 Third exercise: Group work where we try a tool per group

16:00 Recap third exercise, project discussion
Thursday, 9 July 2026

09:00 Project work

09:00 - 12:30

12:30 Lunch
Lunch
12:30 - 13:30

13:30 Project work

13:30 - 17:00
Friday, 10 July 2026

09:00 Project work

09:00 - 12:30

12:30 Lunch
Lunch
12:30 - 13:30

13:30 Project work

13:30 - 15:00

15:00 Final discussion

15:00 - 17:00

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