Deep Learning for Image Analysis
2 Jun 2025, 09:00
→
6 Jun 2025, 17:00
Europe/Berlin
European Neuroscience Institute Göttingen
European Neuroscience Institute Göttingen
ENI-G, Grisebachstr. 5, 37077 Göttingen
Constantin Pape
(
UMIN
)
,
Antonio Politi
(
Facility for Light Microscopy, MPI-NAT, Göttingen
)
entrance_eni.jpg
Map to ENI
Contact
constantin.pape@informatik.uni-goettingen.de
antonio.politi@mpinat.mpg.de
Registration
Registration for the course Deep Learning for Image Analysis
16 / 25
Apply for participation
Monday 2 June
Mon 2 Jun
Tue 3 Jun
Wed 4 Jun
Introduction to DL and classification: Lecture and getting started
1
Lecture: Intro to DL for microscopy, classification and PyTorch
2
Getting started
Participant introductions
Setting up BAND, introducing first exercise on classification
12:00
Lunch
Introduction to DL and classification
3
First exercise: Cell classification
4
Recap first exercise
Tuesday 3 June
Mon 2 Jun
Tue 3 Jun
Wed 4 Jun
Segmentation & Pre-trained Models
5
Lecture: Semantic & Instance Segmentation (U-Net, StarDist, cellpose), pretrained models, denoising
10:30
Small break
6
Intro to exercises for Nucleus and Cell segmentation
12:00
Lunch
Segmentation & Pre-trained Models
Wednesday 4 June
Mon 2 Jun
Tue 3 Jun
Wed 4 Jun
Transfer Learning & Cell Segmentation
7
Lecture: T Transfer Learning & Instance Segmentation: CellPose. Data Annotation: Segment Anything. Other tools for DL in microscopy.
8
Work on third exercise
12:00
Lunch break
Transfer Learning & Cell Segmentation
9
Third and fourth exercise