Deep Learning for Image Analysis
2 Jun 2025, 09:00
→
6 Jun 2025, 17:00
Europe/Berlin
European Neuroscience Institute Göttingen
European Neuroscience Institute Göttingen
ENI-G, Grisebachstr. 5, 37077 Göttingen
Constantin Pape
(
UMIN
)
,
Antonio Politi
(
Facility for Light Microscopy, MPI-NAT, Göttingen
)
entrance_eni.jpg
Map to ENI
Contact
constantin.pape@informatik.uni-goettingen.de
antonio.politi@mpinat.mpg.de
Registration
Registration for the course Deep Learning for Image Analysis
16 / 25
Apply for participation
Monday 2 June
Mon 2 Jun
Tue 3 Jun
Wed 4 Jun
09:00
→
12:00
Introduction to DL and classification: Lecture and getting started
09:00
Lecture: Intro to DL for microscopy, classification and PyTorch
1h 30m
10:30
Getting started
1h 30m
Participant introductions
Setting up BAND, introducing first exercise on classification
12:00
→
12:45
Lunch
45m
12:45
→
17:00
Introduction to DL and classification
12:45
First exercise: Cell classification
3h 30m
16:15
Recap first exercise
45m
Tuesday 3 June
Mon 2 Jun
Tue 3 Jun
Wed 4 Jun
09:00
→
12:00
Segmentation & Pre-trained Models
09:00
Lecture: Semantic & Instance Segmentation (U-Net, StarDist, cellpose), pretrained models, denoising
1h 30m
10:30
Small break
15m
10:45
Intro to exercises for Nucleus and Cell segmentation
1h 15m
12:00
→
12:45
Lunch
45m
12:45
→
17:00
Segmentation & Pre-trained Models
Wednesday 4 June
Mon 2 Jun
Tue 3 Jun
Wed 4 Jun
09:00
→
12:00
Transfer Learning & Cell Segmentation
09:00
Lecture: T Transfer Learning & Instance Segmentation: CellPose. Data Annotation: Segment Anything. Other tools for DL in microscopy.
1h 30m
10:30
Work on third exercise
1h 30m
12:00
→
12:45
Lunch break
45m
12:45
→
17:00
Transfer Learning & Cell Segmentation
12:45
Third and fourth exercise
2h 30m